JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CA13_chr8_85240458_85289073	0/0	g0204	1	0	1	0	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0205	1	0	0	0	0	1	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0206	1	0	0	1	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0207	1	1	0	0	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0208	1	1	0	0	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0209	1	0	0	1	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0210	1	1	0	0	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0211	1	0	0	1	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0212	1	0	0	1	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0213	1	1	0	0	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0214	1	0	0	1	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0215	1	0	0	1	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0216	1	1	0	0	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0217	1	1	0	0	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0218	1	0	1	0	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0219	1	1	0	0	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0220	1	1	0	0	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0221	1	1	0	0	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0222	1	1	0	0	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0223	1	1	0	0	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0224	1	1	0	0	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0225	1	1	0	0	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0226	1	1	0	0	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0227	1	1	0	0	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0228	1	0	0	0	0	1	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0229	1	0	0	0	0	1	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0230	1	0	0	0	0	1	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0231	1	1	0	0	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0232	1	0	0	0	0	1	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0233	1	0	0	0	0	1	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0234	1	1	0	0	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0235	1	0	0	0	0	1	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0236	1	0	0	1	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0237	1	0	0	1	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0238	1	0	0	1	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0239	1	0	0	1	0	0	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	g0240	1	0	0	0	1	0	CA13	chr8	85240458	85289073
CA14_chr1_150252774_150270078	0/0	g0001	55	14	4	25	0	12	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	g0002	53	0	3	44	1	5	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	g0003	50	2	10	29	2	7	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	g0004	29	2	7	6	4	10	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	g0005	19	0	7	12	0	0	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	g0006	16	16	0	0	0	0	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	g0007	12	5	1	6	0	0	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	g0008	12	0	10	2	0	0	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	g0009	11	0	3	5	1	2	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	g0010	10	0	2	5	1	2	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	g0011	8	8	0	0	0	0	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	g0012	7	1	5	0	0	1	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	g0013	7	7	0	0	0	0	CA14	chr1	150252774	150270078