JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CA3_chr8_85433859_85454040	0/0	g0057	1	0	1	0	0	0	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	g0058	1	0	0	1	0	0	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	g0059	1	0	1	0	0	0	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	g0060	1	0	0	1	0	0	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	g0061	1	1	0	0	0	0	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	g0062	1	1	0	0	0	0	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	g0063	1	1	0	0	0	0	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	1/0	g0064	1	0	0	0	0	0	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	g0065	1	0	0	0	0	1	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	g0066	1	0	0	0	0	1	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	g0067	1	0	0	0	0	1	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	g0068	1	0	0	0	0	1	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	g0069	1	1	0	0	0	0	CA3	chr8	85433859	85454040
CA4_chr17_60144973_60164546	0/0	g0001	37	1	13	13	4	6	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0002	36	4	8	15	0	9	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	1/0	g0003	19	2	4	8	3	1	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0004	16	0	2	14	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0005	14	0	3	6	0	5	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0006	9	0	2	7	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0007	9	0	5	4	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0008	8	6	2	0	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0009	7	0	0	7	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0010	7	0	0	7	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0011	6	0	6	0	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0012	6	0	1	5	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0013	6	0	3	2	1	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0014	6	0	0	6	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0015	5	0	0	5	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0016	5	5	0	0	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0017	5	1	1	3	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0018	4	0	1	3	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0019	4	0	1	2	0	1	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0020	4	0	3	0	0	1	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0021	4	4	0	0	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0022	3	0	3	0	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0023	3	3	0	0	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0024	3	0	1	0	0	2	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0025	3	0	0	3	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0026	3	0	0	3	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0027	3	2	1	0	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0028	3	3	0	0	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0029	3	1	2	0	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0030	2	2	0	0	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0031	2	0	0	2	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0032	2	2	0	0	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0033	2	0	0	2	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0034	2	0	0	2	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0035	2	0	0	2	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0036	2	0	0	2	0	0	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	g0037	2	0	0	2	0	0	CA4	chr17	60144973	60164546