JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CA6_chr1_8940868_8980092	0/0	g0425	1	1	0	0	0	0	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	g0426	1	0	1	0	0	0	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	g0427	1	1	0	0	0	0	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	g0428	1	1	0	0	0	0	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	g0429	1	1	0	0	0	0	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	g0430	1	1	0	0	0	0	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	g0431	1	1	0	0	0	0	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	g0432	1	1	0	0	0	0	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	g0433	1	1	0	0	0	0	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	g0434	1	1	0	0	0	0	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	g0435	1	1	0	0	0	0	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	g0436	1	1	0	0	0	0	CA6	chr1	8940868	8980092
CA7_chr16_66839414_66859147	1/1	g0001	94	7	16	49	7	13	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0002	76	2	15	49	3	7	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0003	36	21	5	6	1	3	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0004	35	1	4	29	0	1	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0005	12	12	0	0	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0006	12	0	10	2	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0007	10	0	0	8	0	2	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0008	7	7	0	0	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0009	5	5	0	0	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0010	5	2	1	0	0	2	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0011	4	0	1	3	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0012	4	4	0	0	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0013	4	0	2	0	1	1	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0014	4	4	0	0	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0015	4	0	2	2	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0016	3	3	0	0	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0017	3	3	0	0	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0018	3	0	1	2	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0019	3	0	0	3	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0020	3	0	1	2	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0021	3	0	0	3	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0022	2	2	0	0	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0023	2	2	0	0	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0024	2	0	0	2	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0025	2	2	0	0	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0026	2	0	0	1	0	1	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0027	2	0	0	0	2	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0028	2	1	0	0	0	1	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0029	1	0	1	0	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0030	1	0	0	1	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0031	1	1	0	0	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0032	1	1	0	0	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0033	1	1	0	0	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0034	1	0	0	1	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0035	1	0	0	1	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0036	1	0	0	0	0	1	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0037	1	1	0	0	0	0	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	g0038	1	0	1	0	0	0	CA7	chr16	66839414	66859147