JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CA8_chr8_60180412_60286400	0/0	g0311	1	1	0	0	0	0	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	g0312	1	0	0	1	0	0	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	g0313	1	0	0	1	0	0	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	g0314	1	0	0	1	0	0	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	g0315	1	0	0	1	0	0	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	g0316	1	0	0	0	0	1	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	g0317	1	0	0	0	0	1	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	g0318	1	0	0	1	0	0	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	g0319	1	0	0	1	0	0	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	g0320	1	0	0	1	0	0	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	g0321	1	0	0	1	0	0	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	g0322	1	0	0	1	0	0	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	g0323	1	0	0	0	1	0	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	g0324	1	1	0	0	0	0	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	g0325	1	1	0	0	0	0	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	g0326	1	1	0	0	0	0	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	g0327	1	1	0	0	0	0	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	g0328	1	1	0	0	0	0	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	g0329	1	0	0	1	0	0	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	g0330	1	0	0	0	1	0	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	g0331	1	0	0	0	1	0	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	g0332	1	0	1	0	0	0	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	g0333	1	0	0	1	0	0	CA8	chr8	60180412	60286400
CA9_chr9_35668928_35686159	0/0	g0001	46	0	2	37	2	5	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0002	31	1	1	28	0	1	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/1	g0003	24	1	16	0	0	6	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0004	22	1	8	8	2	3	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0005	19	3	3	8	1	4	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0006	17	0	0	16	0	1	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0007	13	0	4	2	1	6	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0008	11	0	2	7	0	2	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0009	11	8	0	1	0	2	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0010	11	10	1	0	0	0	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0011	9	0	1	6	0	2	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0012	8	0	6	2	0	0	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0013	8	0	0	8	0	0	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0014	8	0	0	8	0	0	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0015	7	5	2	0	0	0	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0016	6	0	2	0	2	2	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0017	6	0	2	2	2	0	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0018	6	5	0	1	0	0	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0019	6	2	3	0	1	0	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0020	5	0	0	5	0	0	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0021	4	0	0	4	0	0	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0022	4	3	1	0	0	0	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0023	4	4	0	0	0	0	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0024	4	1	1	0	1	1	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0025	4	4	0	0	0	0	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0026	3	0	3	0	0	0	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	g0027	3	0	2	0	0	1	CA9	chr9	35668928	35686159