JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CABP7_chr22_29715003_29736833	0/0	g0114	1	1	0	0	0	0	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	g0115	1	0	0	0	0	1	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	g0116	1	0	1	0	0	0	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	g0117	1	0	1	0	0	0	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	g0118	1	0	0	1	0	0	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	g0119	1	0	0	1	0	0	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	g0120	1	0	0	1	0	0	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	g0121	1	0	0	1	0	0	CABP7	chr22	29715003	29736833
CABS1_chr4_70329981_70342116	0/1	g0001	195	18	24	119	10	23	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	1/0	g0002	121	56	17	37	2	8	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	g0003	113	17	34	47	3	12	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	g0004	5	0	2	0	3	0	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	g0005	4	4	0	0	0	0	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	g0006	2	0	0	1	0	1	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	g0007	2	0	0	2	0	0	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	g0008	1	0	0	1	0	0	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	g0009	1	1	0	0	0	0	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	g0010	1	0	0	1	0	0	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	g0011	1	0	1	0	0	0	CABS1	chr4	70329981	70342116
CABYR_chr18_24134062_24166600	0/0	g0001	26	0	10	14	2	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0002	19	1	4	7	3	4	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0003	16	0	4	12	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0004	8	0	0	8	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0005	7	0	1	2	0	4	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0006	7	0	0	7	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0007	6	0	0	6	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0008	6	0	4	0	2	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0009	4	0	0	4	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0010	4	4	0	0	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0011	4	0	1	3	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0012	4	0	0	4	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0013	4	0	1	1	1	1	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0014	4	0	0	4	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0015	3	3	0	0	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0016	3	0	0	3	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0017	3	3	0	0	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0018	3	0	0	0	0	3	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0019	3	0	3	0	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0020	3	0	0	3	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0021	3	0	0	3	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0022	3	0	0	2	1	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0023	3	0	0	3	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0024	2	1	1	0	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0025	2	0	0	2	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0026	2	0	0	2	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0027	2	2	0	0	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0028	2	2	0	0	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0029	2	0	0	2	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0030	2	1	0	0	0	1	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0031	2	0	2	0	0	0	CABYR	chr18	24134062	24166600