JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CABYR_chr18_24134062_24166600	0/0	g0232	1	0	1	0	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0233	1	0	0	1	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0234	1	0	1	0	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0235	1	0	1	0	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0236	1	0	0	0	0	1	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0237	1	0	0	1	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0238	1	0	0	1	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/1	g0239	1	0	0	0	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0240	1	0	0	0	1	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0241	1	0	0	0	0	1	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0242	1	0	1	0	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0243	1	0	0	1	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0244	1	0	0	1	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0245	1	0	1	0	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0246	1	0	0	1	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0247	1	0	0	0	0	1	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0248	1	0	0	1	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0249	1	0	1	0	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0250	1	0	0	1	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0251	1	0	0	0	0	1	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0252	1	0	0	1	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0253	1	0	0	1	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0254	1	1	0	0	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0255	1	0	0	1	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0256	1	0	0	1	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0257	1	1	0	0	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0258	1	0	0	1	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0259	1	0	0	1	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0260	1	0	0	1	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0261	1	0	0	1	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0262	1	0	0	1	0	0	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	g0263	1	1	0	0	0	0	CABYR	chr18	24134062	24166600
CACFD1_chr9_133454978_133475848	0/0	g0001	140	14	21	91	6	8	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	1/0	g0002	36	12	3	14	1	5	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/1	g0003	17	7	1	8	0	0	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	g0004	12	0	3	6	2	1	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	g0005	12	9	3	0	0	0	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	g0006	12	0	0	8	0	4	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	g0007	12	0	7	4	0	1	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	g0008	8	0	5	2	1	0	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	g0009	6	0	0	6	0	0	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	g0010	6	1	2	0	1	2	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	g0011	6	0	6	0	0	0	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	g0012	6	4	2	0	0	0	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	g0013	6	0	1	0	2	3	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	g0014	5	0	1	1	2	1	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	g0015	4	4	0	0	0	0	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	g0016	4	4	0	0	0	0	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	g0017	3	0	0	3	0	0	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	g0018	3	0	1	0	0	2	CACFD1	chr9	133454978	133475848