JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CACNB2_chr10_18335709_18548557	0/0	g0262	1	1	0	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0263	1	0	0	0	0	1	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0264	1	0	0	0	0	1	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0265	1	1	0	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0266	1	0	0	0	0	1	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0267	1	0	1	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0268	1	0	0	0	0	1	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0269	1	0	1	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0270	1	1	0	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0271	1	1	0	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0272	1	1	0	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0273	1	0	1	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0274	1	1	0	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0275	1	0	0	0	1	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0276	1	1	0	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0277	1	0	0	0	1	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0278	1	0	0	0	1	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0279	1	0	1	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0280	1	0	1	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0281	1	0	0	0	1	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0282	1	0	1	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0283	1	0	0	1	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0284	1	0	0	1	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0285	1	0	0	1	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0286	1	0	0	1	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0287	1	1	0	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0288	1	1	0	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0289	1	1	0	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0290	1	0	1	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0291	1	1	0	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0292	1	1	0	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0293	1	1	0	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0294	1	0	1	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0295	1	0	0	1	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0296	1	1	0	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0297	1	0	0	1	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0298	1	1	0	0	0	0	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0299	1	0	0	0	0	1	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0300	1	0	0	0	0	1	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	g0301	1	0	0	0	0	1	CACNB2	chr10	18335709	18548557
CACNB3_chr12_48813496_48833941	0/0	g0001	105	27	12	61	2	3	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/0	g0002	104	3	24	64	2	11	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/0	g0003	18	1	8	0	7	2	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/0	g0004	12	11	1	0	0	0	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/0	g0005	11	0	9	2	0	0	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/0	g0006	8	4	0	2	0	2	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/0	g0007	6	6	0	0	0	0	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	1/0	g0008	5	0	3	1	0	0	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/0	g0009	4	0	1	0	0	3	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/1	g0010	4	1	1	0	0	1	CACNB3	chr12	48813496	48833941