JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CACUL1_chr10_118671411_118759970	0/0	g0333	1	0	0	1	0	0	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	g0334	1	0	0	1	0	0	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	g0335	1	0	0	0	0	1	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	g0336	1	0	0	0	0	1	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	g0337	1	0	0	0	0	1	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	g0338	1	0	0	0	0	1	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	g0339	1	0	0	0	1	0	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	g0340	1	0	0	0	0	1	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	g0341	1	0	1	0	0	0	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	g0342	1	1	0	0	0	0	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	g0343	1	1	0	0	0	0	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	g0344	1	0	0	1	0	0	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	g0345	1	0	0	0	0	1	CACUL1	chr10	118671411	118759970
CACYBP_chr1_174994947_175017027	1/0	g0001	71	0	16	51	1	2	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0002	52	5	4	37	1	5	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/1	g0003	47	0	2	37	0	7	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0004	31	4	11	10	2	4	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0005	15	0	7	1	1	6	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0006	12	0	10	0	1	1	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0007	11	0	0	11	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0008	10	0	0	10	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0009	9	8	1	0	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0010	8	0	0	5	0	3	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0011	7	7	0	0	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0012	6	6	0	0	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0013	6	0	0	6	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0014	6	4	2	0	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0015	5	0	1	1	3	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0016	4	0	1	1	2	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0017	4	4	0	0	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0018	4	4	0	0	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0019	4	4	0	0	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0020	4	2	2	0	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0021	4	0	2	0	0	2	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0022	3	0	1	2	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0023	3	2	0	0	1	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0024	3	3	0	0	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0025	3	3	0	0	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0026	2	1	1	0	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0027	2	0	1	0	1	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0028	2	2	0	0	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0029	2	2	0	0	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0030	2	0	1	1	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0031	2	0	0	2	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0032	2	0	0	2	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0033	2	0	0	2	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0034	2	0	0	0	1	1	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0035	2	2	0	0	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0036	2	2	0	0	0	0	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	g0037	2	0	0	0	2	0	CACYBP	chr1	174994947	175017027