JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CADM2_chr3_84953989_86079429	0/0	g0129	1	0	1	0	0	0	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	g0130	1	0	0	0	0	1	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	g0131	1	0	0	0	0	1	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	g0132	1	1	0	0	0	0	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	g0133	1	1	0	0	0	0	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	g0134	1	0	0	0	1	0	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	g0135	1	0	0	1	0	0	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	g0136	1	1	0	0	0	0	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	g0137	1	1	0	0	0	0	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	g0138	1	1	0	0	0	0	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	g0139	1	1	0	0	0	0	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	g0140	1	1	0	0	0	0	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	g0141	1	1	0	0	0	0	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	g0142	1	1	0	0	0	0	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	g0143	1	1	0	0	0	0	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	g0144	1	1	0	0	0	0	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	g0145	1	1	0	0	0	0	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	g0146	1	0	0	1	0	0	CADM2	chr3	84953989	86079429
CADM3_chr1_159166615_159208313	0/0	g0001	20	0	4	12	0	4	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0002	13	0	0	9	1	3	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0003	11	0	3	8	0	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0004	9	0	1	8	0	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0005	7	7	0	0	0	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0006	6	0	1	0	4	1	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0007	6	0	0	6	0	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0008	5	0	0	5	0	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0009	5	0	2	2	1	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0010	5	0	5	0	0	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0011	5	0	5	0	0	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0012	5	0	0	5	0	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0013	4	0	0	3	0	1	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0014	4	4	0	0	0	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0015	4	0	0	4	0	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0016	4	0	3	0	1	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0017	4	0	0	4	0	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0018	4	4	0	0	0	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/1	g0019	3	0	1	0	1	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0020	3	0	0	3	0	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0021	3	0	0	3	0	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0022	3	0	0	2	0	1	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0023	3	0	1	0	1	1	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0024	3	0	0	3	0	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0025	3	0	0	3	0	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0026	3	0	3	0	0	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0027	3	0	3	0	0	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0028	2	0	0	2	0	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0029	2	2	0	0	0	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0030	2	2	0	0	0	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0031	2	2	0	0	0	0	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	g0032	2	2	0	0	0	0	CADM3	chr1	159166615	159208313