JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CAGE1_chr6_7321659_7394742	0/0	g0338	1	1	0	0	0	0	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	g0339	1	1	0	0	0	0	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	g0340	1	0	1	0	0	0	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	g0341	1	0	0	0	0	1	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	g0342	1	0	0	1	0	0	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	g0343	1	0	0	0	0	1	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	g0344	1	0	1	0	0	0	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	g0345	1	1	0	0	0	0	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	g0346	1	0	0	1	0	0	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	g0347	1	0	0	0	0	1	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	g0348	1	0	0	1	0	0	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	g0349	1	0	0	1	0	0	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	g0350	1	0	0	1	0	0	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	g0351	1	0	0	1	0	0	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	g0352	1	0	0	1	0	0	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	g0353	1	0	0	1	0	0	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	g0354	1	0	1	0	0	0	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	g0355	1	0	0	1	0	0	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	g0356	1	0	1	0	0	0	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	g0357	1	0	0	0	0	1	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	g0358	1	0	0	0	0	1	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	g0359	1	0	0	0	0	1	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	g0360	1	0	0	1	0	0	CAGE1	chr6	7321659	7394742
CALB1_chr8_90053608_90087879	0/0	g0001	58	1	17	28	4	8	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0002	32	0	8	21	1	2	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0003	19	0	1	18	0	0	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0004	18	0	4	14	0	0	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0005	14	1	3	7	3	0	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0006	14	0	0	14	0	0	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0007	9	0	3	6	0	0	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0008	9	9	0	0	0	0	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0009	8	0	3	4	1	0	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0010	7	4	0	2	0	1	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0011	6	1	1	3	0	1	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0012	6	0	0	6	0	0	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0013	5	0	0	5	0	0	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0014	5	5	0	0	0	0	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0015	5	0	0	0	0	5	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0016	5	5	0	0	0	0	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0017	4	3	1	0	0	0	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0018	4	0	0	4	0	0	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0019	3	3	0	0	0	0	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0020	3	2	1	0	0	0	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0021	3	0	0	3	0	0	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0022	3	3	0	0	0	0	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0023	3	3	0	0	0	0	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0024	3	0	0	3	0	0	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	1/0	g0025	3	0	1	0	1	0	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0026	3	2	0	1	0	0	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	g0027	3	0	0	0	0	3	CALB1	chr8	90053608	90087879