JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CALB2_chr16_71353723_71395433	0/0	g0341	1	0	0	0	0	1	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0342	1	0	1	0	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0343	1	0	0	1	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0344	1	0	0	0	0	1	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0345	1	0	0	1	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0346	1	0	0	0	1	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0347	1	1	0	0	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0348	1	1	0	0	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0349	1	1	0	0	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0350	1	0	0	1	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0351	1	0	0	1	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0352	1	0	0	1	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0353	1	0	0	1	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0354	1	0	1	0	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0355	1	0	0	1	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0356	1	0	0	0	0	1	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0357	1	1	0	0	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0358	1	0	1	0	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0359	1	0	1	0	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0360	1	0	1	0	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0361	1	0	1	0	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0362	1	0	1	0	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0363	1	0	1	0	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0364	1	0	0	1	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0365	1	1	0	0	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0366	1	1	0	0	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0367	1	1	0	0	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0368	1	1	0	0	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0369	1	0	0	1	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0370	1	0	0	1	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0371	1	0	0	1	0	0	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	g0372	1	0	0	1	0	0	CALB2	chr16	71353723	71395433
CALCA_chr11_14963501_14977351	0/1	g0001	160	34	14	82	8	21	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0002	102	16	32	40	4	10	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0003	34	0	0	32	0	2	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0004	20	2	6	10	0	2	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0005	15	9	1	5	0	0	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0006	11	11	0	0	0	0	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0007	8	8	0	0	0	0	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0008	4	3	1	0	0	0	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0009	4	0	0	0	0	4	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0010	2	2	0	0	0	0	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0011	2	0	0	0	2	0	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0012	2	0	1	0	0	1	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0013	2	0	0	2	0	0	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0014	2	0	2	0	0	0	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0015	1	0	0	1	0	0	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0016	1	1	0	0	0	0	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0017	1	1	0	0	0	0	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	1/0	g0018	1	0	0	0	0	0	CALCA	chr11	14963501	14977351