JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CALCA_chr11_14963501_14977351	0/0	g0019	1	1	0	0	0	0	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0020	1	0	0	0	0	1	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0021	1	1	0	0	0	0	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0022	1	0	1	0	0	0	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0023	1	0	1	0	0	0	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0024	1	0	0	1	0	0	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0025	1	1	0	0	0	0	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0026	1	1	0	0	0	0	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0027	1	1	0	0	0	0	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0028	1	0	1	0	0	0	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0029	1	0	0	0	0	1	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	g0030	1	0	0	1	0	0	CALCA	chr11	14963501	14977351
CALCB_chr11_15068593_15083637	0/1	g0001	187	35	13	116	5	17	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0002	99	7	29	43	8	12	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0003	28	3	11	11	1	2	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0004	15	3	4	0	3	5	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0005	12	12	0	0	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0006	9	9	0	0	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0007	8	0	0	8	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0008	5	0	0	5	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0009	4	4	0	0	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0010	4	0	2	0	0	2	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0011	4	0	0	4	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0012	3	3	0	0	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	1/0	g0013	3	2	0	0	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0014	3	2	1	0	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0015	3	0	0	3	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0016	2	1	1	0	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0017	2	0	0	2	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0018	2	2	0	0	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0019	2	2	0	0	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0020	2	2	0	0	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0021	1	1	0	0	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0022	1	0	1	0	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0023	1	1	0	0	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0024	1	1	0	0	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0025	1	1	0	0	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0026	1	0	0	0	0	1	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0027	1	0	0	0	0	1	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0028	1	1	0	0	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0029	1	0	0	1	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0030	1	1	0	0	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0031	1	1	0	0	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0032	1	1	0	0	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0033	1	0	0	0	1	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0034	1	1	0	0	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0035	1	0	0	1	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0036	1	0	1	0	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0037	1	1	0	0	0	0	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	g0038	1	0	1	0	0	0	CALCB	chr11	15068593	15083637