JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CALD1_chr7_134774634_134975729	0/0	g0246	1	1	0	0	0	0	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	g0247	1	1	0	0	0	0	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	g0248	1	1	0	0	0	0	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	g0249	1	1	0	0	0	0	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	g0250	1	0	0	1	0	0	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	g0251	1	0	0	1	0	0	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	g0252	1	0	0	1	0	0	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	g0253	1	0	1	0	0	0	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	g0254	1	1	0	0	0	0	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	g0255	1	0	1	0	0	0	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	g0256	1	0	0	1	0	0	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	g0257	1	0	0	1	0	0	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	g0258	1	1	0	0	0	0	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	g0259	1	0	1	0	0	0	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	g0260	1	1	0	0	0	0	CALD1	chr7	134774634	134975729
CALHM1_chr10_103448240_103463900	0/0	g0001	48	5	16	22	1	4	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0002	43	5	5	31	0	2	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0003	35	0	6	24	3	2	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/1	g0004	32	2	1	21	0	7	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0005	20	0	10	4	5	1	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0006	17	0	0	17	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0007	14	2	2	9	1	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0008	14	12	2	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0009	11	0	3	6	0	2	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0010	10	0	2	8	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0011	10	0	0	10	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0012	8	0	2	0	0	6	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0013	7	0	0	7	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0014	6	0	2	3	0	1	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0015	6	1	1	1	1	2	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0016	6	0	0	6	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0017	6	0	6	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0018	6	0	0	3	0	3	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0019	6	6	0	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0020	5	0	0	5	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0021	5	0	0	5	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0022	5	4	1	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0023	5	1	3	0	0	1	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0024	5	0	1	0	0	4	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0025	5	4	1	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0026	5	4	1	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0027	4	1	3	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0028	4	4	0	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0029	4	0	0	4	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0030	4	4	0	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0031	4	4	0	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0032	4	4	0	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	1/0	g0033	3	0	0	0	2	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0034	3	0	0	3	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0035	3	0	0	0	0	3	CALHM1	chr10	103448240	103463900