JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CALHM1_chr10_103448240_103463900	0/0	g0086	1	0	1	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0087	1	0	0	1	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0088	1	0	1	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0089	1	0	0	0	0	1	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0090	1	0	1	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0091	1	0	1	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0092	1	0	0	0	0	1	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0093	1	0	0	0	0	1	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0094	1	1	0	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0095	1	1	0	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0096	1	1	0	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0097	1	1	0	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0098	1	1	0	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0099	1	1	0	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0100	1	1	0	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0101	1	1	0	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0102	1	1	0	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0103	1	0	0	0	0	1	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0104	1	0	1	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0105	1	1	0	0	0	0	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	g0106	1	0	0	1	0	0	CALHM1	chr10	103448240	103463900
CALHM2_chr10_103441786_103457370	0/1	g0001	135	7	28	71	5	23	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0002	70	2	16	45	5	2	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0003	31	0	0	28	0	3	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0004	29	0	8	19	1	1	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0005	16	2	0	14	0	0	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0006	13	1	5	0	1	6	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	1/0	g0007	13	8	1	1	2	0	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0008	10	8	1	0	0	1	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0009	9	8	1	0	0	0	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0010	8	2	3	0	1	2	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0011	7	7	0	0	0	0	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0012	7	7	0	0	0	0	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0013	7	2	0	5	0	0	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0014	5	5	0	0	0	0	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0015	4	4	0	0	0	0	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0016	3	0	0	3	0	0	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0017	3	3	0	0	0	0	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0018	3	3	0	0	0	0	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0019	3	1	0	0	0	2	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0020	3	0	0	3	0	0	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0021	3	1	0	2	0	0	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0022	3	0	0	2	1	0	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0023	2	0	0	2	0	0	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0024	2	0	0	2	0	0	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0025	2	0	0	0	2	0	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0026	2	0	2	0	0	0	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0027	2	0	2	0	0	0	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0028	2	0	0	0	0	2	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0029	2	1	1	0	0	0	CALHM2	chr10	103441786	103457370