JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CALHM2_chr10_103441786_103457370	0/0	g0080	1	0	0	1	0	0	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	g0081	1	0	0	1	0	0	CALHM2	chr10	103441786	103457370
CALHM3_chr10_103467804_103484240	0/1	g0001	180	36	32	89	4	18	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0002	79	4	11	45	3	16	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0003	25	14	7	4	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	1/0	g0004	21	2	8	1	7	2	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0005	16	0	0	16	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0006	15	14	1	0	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0007	9	0	0	9	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0008	8	1	5	0	2	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0009	7	0	0	6	0	1	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0010	6	0	6	0	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0011	6	5	1	0	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0012	5	0	0	5	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0013	5	0	1	0	0	4	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0014	5	0	0	5	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0015	5	5	0	0	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0016	5	5	0	0	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0017	4	0	0	4	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0018	4	1	0	0	2	1	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0019	4	0	0	4	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0020	4	3	1	0	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0021	3	0	0	3	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0022	3	3	0	0	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0023	3	0	0	3	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0024	2	2	0	0	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0025	2	0	0	2	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0026	2	0	0	2	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0027	2	1	1	0	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0028	1	0	1	0	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0029	1	0	0	1	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0030	1	0	0	1	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0031	1	0	0	1	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0032	1	0	0	1	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0033	1	0	1	0	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0034	1	0	0	1	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0035	1	0	0	1	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0036	1	0	0	1	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0037	1	0	0	1	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0038	1	0	0	1	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0039	1	0	0	0	0	1	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0040	1	0	0	1	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0041	1	0	0	0	0	1	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0042	1	0	1	0	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0043	1	0	0	1	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0044	1	0	1	0	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0045	1	1	0	0	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0046	1	1	0	0	0	0	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	g0047	1	0	0	1	0	0	CALHM3	chr10	103467804	103484240
CALHM4_chr6_116548751_116566127	0/0	g0001	107	2	28	62	6	9	CALHM4	chr6	116548751	116566127