JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CALHM4_chr6_116548751_116566127	1/0	g0002	83	31	9	23	5	14	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0003	58	4	12	32	5	5	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0004	38	1	1	34	0	2	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0005	33	7	10	15	0	1	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0006	10	0	0	10	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/1	g0007	10	4	0	2	1	2	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0008	7	7	0	0	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0009	7	1	3	1	0	2	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0010	6	5	1	0	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0011	5	0	0	1	0	4	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0012	5	5	0	0	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0013	5	4	1	0	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0014	4	3	0	0	1	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0015	4	4	0	0	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0016	2	2	0	0	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0017	2	2	0	0	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0018	2	2	0	0	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0019	2	0	1	0	0	1	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0020	1	0	0	1	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0021	1	0	0	1	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0022	1	0	1	0	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0023	1	1	0	0	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0024	1	0	1	0	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0025	1	0	0	1	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0026	1	0	0	1	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0027	1	1	0	0	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0028	1	1	0	0	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0029	1	0	0	1	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0030	1	0	0	0	0	1	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0031	1	0	0	1	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0032	1	1	0	0	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0033	1	0	0	0	0	1	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0034	1	1	0	0	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0035	1	1	0	0	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0036	1	1	0	0	0	0	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	g0037	1	1	0	0	0	0	CALHM4	chr6	116548751	116566127
CALHM5_chr6_116506639_116529788	0/0	g0001	106	2	26	63	6	9	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	g0002	90	5	7	72	0	6	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	1/0	g0003	78	33	6	21	6	11	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	g0004	29	7	10	11	0	1	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/1	g0005	22	7	1	5	0	8	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	g0006	13	0	7	0	5	1	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	g0007	11	10	1	0	0	0	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	g0008	9	3	3	1	0	2	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	g0009	9	8	0	0	1	0	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	g0010	8	8	0	0	0	0	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	g0011	5	2	0	1	0	2	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	g0012	5	0	0	5	0	0	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	g0013	4	3	1	0	0	0	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	g0014	3	0	2	0	0	1	CALHM5	chr6	116506639	116529788