JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CALHM5_chr6_116506639_116529788	0/0	g0015	2	1	1	0	0	0	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	g0016	1	0	0	1	0	0	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	g0017	1	0	0	1	0	0	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	g0018	1	0	0	0	0	1	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	g0019	1	0	0	0	0	1	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	g0020	1	0	1	0	0	0	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	g0021	1	0	0	0	0	1	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	g0022	1	1	0	0	0	0	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	g0023	1	0	0	1	0	0	CALHM5	chr6	116506639	116529788
CALHM6_chr6_116456375_116468771	0/0	g0001	108	3	12	77	6	10	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/1	g0002	84	48	11	6	3	15	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0003	67	3	23	32	2	7	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0004	42	0	1	41	0	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0005	21	4	3	8	0	6	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0006	19	4	0	11	0	4	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0007	17	0	1	12	2	2	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0008	10	1	8	1	0	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0009	8	8	0	0	0	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0010	7	0	0	7	0	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0011	7	1	2	1	1	2	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0012	6	6	0	0	0	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0013	6	0	4	1	0	1	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0014	6	6	0	0	0	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0015	5	1	2	0	2	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0016	3	0	1	2	0	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0017	3	3	0	0	0	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0018	2	2	0	0	0	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0019	2	0	1	0	0	1	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0020	2	0	0	2	0	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	1/0	g0021	2	0	1	0	0	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0022	2	0	0	2	0	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0023	1	1	0	0	0	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0024	1	1	0	0	0	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0025	1	0	0	1	0	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0026	1	0	0	0	1	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0027	1	1	0	0	0	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0028	1	0	0	1	0	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0029	1	0	0	0	1	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0030	1	0	0	1	0	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0031	1	1	0	0	0	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0032	1	0	0	1	0	0	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	g0033	1	0	0	1	0	0	CALHM6	chr6	116456375	116468771
CALM1_chr14_90392029_90413268	0/1	g0001	40	2	10	19	5	3	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	g0002	39	0	6	33	0	0	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	g0003	26	4	12	3	0	7	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	g0004	25	0	4	21	0	0	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	g0005	24	0	6	18	0	0	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	g0006	19	3	4	8	1	3	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	g0007	17	2	3	6	1	5	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	g0008	16	1	4	3	2	6	CALM1	chr14	90392029	90413268