JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CALM2_chr2_47155084_47181511	0/0	g0350	1	0	0	1	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0351	1	0	0	1	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0352	1	0	0	0	0	1	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0353	1	0	1	0	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0354	1	0	1	0	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0355	1	0	0	1	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0356	1	0	1	0	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0357	1	0	0	0	0	1	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0358	1	0	0	1	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0359	1	0	0	1	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0360	1	0	0	0	0	1	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0361	1	1	0	0	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0362	1	0	0	1	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0363	1	0	0	1	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0364	1	0	1	0	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0365	1	0	0	1	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0366	1	1	0	0	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0367	1	0	0	1	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0368	1	0	0	1	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0369	1	0	0	1	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0370	1	0	0	1	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0371	1	0	0	1	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0372	1	1	0	0	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0373	1	1	0	0	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0374	1	1	0	0	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0375	1	1	0	0	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0376	1	1	0	0	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0377	1	1	0	0	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0378	1	1	0	0	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0379	1	1	0	0	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0380	1	0	0	1	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0381	1	0	0	1	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0382	1	0	0	1	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0383	1	1	0	0	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0384	1	1	0	0	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0385	1	1	0	0	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0386	1	1	0	0	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0387	1	1	0	0	0	0	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	g0388	1	0	0	1	0	0	CALM2	chr2	47155084	47181511
CALM3_chr19_46596330_46615782	0/0	g0001	64	2	5	51	1	5	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	g0002	54	10	5	31	0	8	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	g0003	44	9	19	9	6	1	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/1	g0004	42	14	8	14	2	3	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	1/0	g0005	26	0	4	13	5	3	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	g0006	26	2	10	5	4	5	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	g0007	21	1	6	10	0	4	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	g0008	15	0	4	11	0	0	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	g0009	8	0	1	6	0	1	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	g0010	8	8	0	0	0	0	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	g0011	6	1	0	4	0	1	CALM3	chr19	46596330	46615782