JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CALM3_chr19_46596330_46615782	0/0	g0062	1	0	1	0	0	0	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	g0063	1	1	0	0	0	0	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	g0064	1	1	0	0	0	0	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	g0065	1	0	1	0	0	0	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	g0066	1	0	1	0	0	0	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	g0067	1	1	0	0	0	0	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	g0068	1	0	0	1	0	0	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	g0069	1	1	0	0	0	0	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	g0070	1	0	1	0	0	0	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	g0071	1	0	0	1	0	0	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	g0072	1	0	0	1	0	0	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	g0073	1	0	0	1	0	0	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	g0074	1	0	0	0	0	1	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	g0075	1	1	0	0	0	0	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	g0076	1	1	0	0	0	0	CALM3	chr19	46596330	46615782
CALML3_chr10_5519961_5531771	1/1	g0000	452	94	82	208	18	48	CALML3	chr10	5519961	5531771
CALML4_chr15_68185705_68210332	0/0	g0001	28	2	3	19	0	4	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0002	22	0	5	15	0	2	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0003	22	1	7	9	0	5	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/1	g0004	18	2	6	0	4	5	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0005	17	1	7	5	2	2	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0006	8	0	6	2	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0007	8	0	0	7	1	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0008	8	0	0	8	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0009	7	0	0	7	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0010	6	0	1	2	1	2	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0011	6	6	0	0	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0012	5	0	0	0	2	3	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0013	5	0	0	5	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0014	4	0	4	0	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0015	4	0	0	4	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0016	4	0	0	4	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0017	3	0	3	0	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0018	3	1	1	0	0	1	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0019	3	3	0	0	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0020	3	3	0	0	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0021	3	3	0	0	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0022	3	0	0	3	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0023	3	0	1	0	1	1	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0024	3	0	0	3	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0025	3	0	0	3	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0026	3	0	0	2	0	1	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0027	3	0	0	3	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0028	2	2	0	0	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0029	2	0	1	1	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0030	2	0	0	0	0	2	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0031	2	1	1	0	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0032	2	0	2	0	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0033	2	0	0	1	0	1	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0034	2	0	0	2	0	0	CALML4	chr15	68185705	68210332