JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CALML4_chr15_68185705_68210332	0/0	g0185	1	1	0	0	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0186	1	1	0	0	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0187	1	0	1	0	0	0	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	g0188	1	1	0	0	0	0	CALML4	chr15	68185705	68210332
CALML5_chr10_5493697_5504570	1/1	g0000	444	94	74	210	18	46	CALML5	chr10	5493697	5504570
CALML6_chr1_1910260_1922296	1/0	g0001	158	30	31	68	7	21	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/1	g0002	126	3	35	67	8	12	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	g0003	45	11	6	18	0	10	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	g0004	29	25	3	0	0	1	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	g0005	6	0	0	6	0	0	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	g0006	6	6	0	0	0	0	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	g0007	3	3	0	0	0	0	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	g0008	3	3	0	0	0	0	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	g0009	3	3	0	0	0	0	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	g0010	2	2	0	0	0	0	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	g0011	2	1	1	0	0	0	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	g0012	2	2	0	0	0	0	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	g0013	1	0	0	1	0	0	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	g0014	1	0	0	1	0	0	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	g0015	1	1	0	0	0	0	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	g0016	1	0	1	0	0	0	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	g0017	1	1	0	0	0	0	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	g0018	1	0	0	1	0	0	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	g0019	1	0	1	0	0	0	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	g0020	1	0	0	0	1	0	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	g0021	1	1	0	0	0	0	CALML6	chr1	1910260	1922296
CALN1_chr7_71774491_72417338	0/0	g0001	1	0	1	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0002	1	1	0	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0003	1	1	0	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0004	1	1	0	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0005	1	1	0	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0006	1	1	0	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0007	1	0	1	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0008	1	0	0	1	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0009	1	0	0	1	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0010	1	0	0	1	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0011	1	0	0	0	0	1	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0012	1	0	0	1	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0013	1	0	0	1	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0014	1	0	0	1	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0015	1	0	0	1	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0016	1	0	0	1	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0017	1	0	1	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0018	1	0	0	1	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0019	1	0	1	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0020	1	0	1	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0021	1	0	0	0	1	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0022	1	0	1	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0023	1	0	1	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0024	1	0	0	1	0	0	CALN1	chr7	71774491	72417338