JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CALN1_chr7_71774491_72417338	0/0	g0125	1	0	1	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0126	1	1	0	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0127	1	0	0	1	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0128	1	0	1	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0129	1	1	0	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0130	1	1	0	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0131	1	0	0	0	1	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0132	1	0	0	0	0	1	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0133	1	0	1	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0134	1	1	0	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0135	1	1	0	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0136	1	1	0	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0137	1	1	0	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0138	1	0	0	0	1	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0139	1	1	0	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0140	1	1	0	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0141	1	1	0	0	0	0	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	g0142	1	1	0	0	0	0	CALN1	chr7	71774491	72417338
CALR3_chr19_16474061_16501167	0/0	g0001	36	5	6	11	4	10	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0002	13	0	2	11	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0003	8	0	0	8	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0004	7	0	6	1	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0005	7	0	2	4	0	1	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0006	7	0	1	5	0	1	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0007	6	1	5	0	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0008	5	5	0	0	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0009	4	4	0	0	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0010	4	1	0	3	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0011	4	1	1	1	0	1	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0012	3	3	0	0	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0013	3	0	0	3	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0014	3	1	0	1	1	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0015	3	0	0	2	0	1	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0016	3	0	2	1	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0017	3	3	0	0	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0018	2	0	0	2	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0019	2	0	0	2	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0020	2	0	0	2	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0021	2	0	0	1	1	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0022	2	0	0	2	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0023	2	0	0	1	1	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0024	2	2	0	0	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0025	2	2	0	0	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0026	2	0	2	0	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0027	2	0	0	2	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0028	2	0	1	1	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0029	2	0	0	0	0	2	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0030	2	0	1	0	0	1	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0031	2	2	0	0	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0032	2	0	2	0	0	0	CALR3	chr19	16474061	16501167