JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CALR3_chr19_16474061_16501167	0/0	g0233	1	1	0	0	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0234	1	1	0	0	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0235	1	1	0	0	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0236	1	0	0	1	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0237	1	1	0	0	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0238	1	0	0	1	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0239	1	0	0	1	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0240	1	0	0	1	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0241	1	0	1	0	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0242	1	0	0	1	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0243	1	1	0	0	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0244	1	0	0	1	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0245	1	1	0	0	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0246	1	0	0	1	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0247	1	0	0	1	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0248	1	0	0	1	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0249	1	0	0	1	0	0	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	g0250	1	1	0	0	0	0	CALR3	chr19	16474061	16501167
CALR_chr19_12933609_12949489	0/0	g0001	55	5	13	22	2	13	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0002	54	2	5	42	2	3	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/1	g0003	39	9	17	4	6	2	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0004	14	2	3	5	0	4	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0005	14	0	3	8	3	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0006	13	0	1	9	0	3	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0007	11	5	1	1	0	4	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0008	10	9	0	1	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0009	9	8	1	0	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0010	8	8	0	0	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0011	7	0	4	2	0	1	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0012	5	3	1	0	0	1	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0013	5	0	5	0	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0014	3	3	0	0	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0015	3	0	3	0	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0016	3	0	1	1	0	1	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0017	3	3	0	0	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0018	2	0	0	1	1	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0019	2	0	0	0	1	1	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0020	2	2	0	0	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0021	2	0	0	2	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0022	2	0	2	0	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0023	2	2	0	0	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0024	2	2	0	0	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0025	2	0	1	1	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0026	2	1	1	0	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0027	2	0	1	1	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0028	2	2	0	0	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0029	2	1	1	0	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0030	2	0	0	2	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0031	2	1	1	0	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0032	2	2	0	0	0	0	CALR	chr19	12933609	12949489