JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CALR_chr19_12933609_12949489	0/0	g0083	1	1	0	0	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0084	1	0	0	0	0	1	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0085	1	0	0	1	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0086	1	0	0	1	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0087	1	0	0	1	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0088	1	0	0	1	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0089	1	0	0	1	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0090	1	1	0	0	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0091	1	1	0	0	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0092	1	1	0	0	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0093	1	1	0	0	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0094	1	1	0	0	0	0	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	g0095	1	0	1	0	0	0	CALR	chr19	12933609	12949489
CALU_chr7_128734359_128778400	0/0	g0001	11	3	3	1	1	3	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0002	8	0	2	4	0	2	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0003	6	0	2	4	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0004	6	0	1	5	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0005	6	0	5	0	0	1	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0006	4	0	3	1	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0007	4	0	0	4	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0008	4	2	0	0	0	2	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0009	3	0	3	0	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0010	3	0	0	3	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0011	3	3	0	0	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0012	3	0	2	1	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0013	2	0	0	2	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0014	2	0	0	2	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0015	2	0	2	0	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0016	2	0	0	2	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0017	2	0	0	2	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0018	2	0	0	2	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0019	2	2	0	0	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0020	2	2	0	0	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0021	2	0	2	0	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0022	2	0	0	2	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0023	2	0	0	2	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0024	2	2	0	0	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0025	2	0	1	0	0	1	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0026	2	1	1	0	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0027	2	0	0	2	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0028	2	0	0	2	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0029	2	0	0	0	2	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0030	2	0	2	0	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0031	1	1	0	0	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0032	1	0	0	1	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0033	1	0	0	1	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0034	1	0	1	0	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0035	1	0	0	1	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0036	1	0	1	0	0	0	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	g0037	1	0	1	0	0	0	CALU	chr7	128734359	128778400