JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CAMTA1_chr1_6780454_7774706	0/0	g0026	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0027	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0028	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0029	1	0	0	0	1	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0030	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0031	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0032	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0033	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0034	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0035	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0036	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0037	1	0	0	0	0	1	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0038	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0039	1	0	0	0	0	1	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0040	1	0	0	1	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0041	1	0	0	0	0	1	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0042	1	0	1	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0043	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0044	1	0	1	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0045	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0046	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0047	1	0	0	1	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0048	1	0	0	1	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0049	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0050	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0051	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0052	1	0	1	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0053	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0054	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0055	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0056	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0057	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	g0058	1	1	0	0	0	0	CAMTA1	chr1	6780454	7774706
CAMTA2_chr17_4962997_4992675	0/0	g0001	57	0	5	38	3	11	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	g0002	35	5	10	11	2	7	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	g0003	17	0	2	14	0	1	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	g0004	15	2	5	7	0	1	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	g0005	10	8	2	0	0	0	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	g0006	9	0	0	9	0	0	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	g0007	9	0	7	2	0	0	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	g0008	8	1	0	7	0	0	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	g0009	7	0	1	6	0	0	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/1	g0010	6	0	2	0	3	0	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	g0011	5	5	0	0	0	0	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	g0012	4	0	0	4	0	0	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	g0013	4	3	1	0	0	0	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	g0014	4	0	1	2	1	0	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	g0015	4	1	0	3	0	0	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	g0016	4	4	0	0	0	0	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	g0017	4	0	0	4	0	0	CAMTA2	chr17	4962997	4992675