JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CANT1_chr17_78986716_79014764	0/0	g0247	1	0	0	1	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0248	1	1	0	0	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0249	1	0	0	1	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0250	1	0	0	1	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0251	1	1	0	0	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0252	1	0	0	1	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0253	1	0	0	1	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0254	1	0	0	1	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0255	1	1	0	0	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0256	1	1	0	0	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0257	1	0	1	0	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0258	1	1	0	0	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0259	1	1	0	0	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0260	1	1	0	0	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0261	1	1	0	0	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0262	1	1	0	0	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0263	1	1	0	0	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0264	1	1	0	0	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0265	1	0	0	1	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0266	1	0	0	1	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0267	1	0	0	1	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0268	1	0	0	1	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0269	1	1	0	0	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0270	1	0	0	1	0	0	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	g0271	1	0	0	1	0	0	CANT1	chr17	78986716	79014764
CANX_chr5_179693967_179736641	0/0	g0001	8	0	2	5	1	0	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0002	7	0	0	5	1	1	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0003	6	1	2	2	0	1	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0004	5	0	1	4	0	0	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0005	4	0	0	4	0	0	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0006	3	0	0	3	0	0	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0007	3	0	2	1	0	0	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0008	3	0	0	3	0	0	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0009	3	1	0	2	0	0	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	1/0	g0010	3	1	1	0	0	0	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0011	3	3	0	0	0	0	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0012	3	0	0	3	0	0	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0013	3	0	3	0	0	0	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0014	2	0	1	1	0	0	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0015	2	0	0	0	2	0	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0016	2	2	0	0	0	0	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0017	2	0	2	0	0	0	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0018	2	0	0	2	0	0	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0019	2	0	1	0	0	1	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0020	2	0	0	2	0	0	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0021	2	1	0	1	0	0	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0022	2	1	0	1	0	0	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0023	2	2	0	0	0	0	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0024	2	0	0	1	0	1	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	g0025	2	2	0	0	0	0	CANX	chr5	179693967	179736641