JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CAPG_chr2_85389753_85415366	0/0	g0218	1	0	0	1	0	0	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0219	1	1	0	0	0	0	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0220	1	1	0	0	0	0	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0221	1	1	0	0	0	0	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0222	1	1	0	0	0	0	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0223	1	0	1	0	0	0	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0224	1	0	1	0	0	0	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0225	1	0	0	0	0	1	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0226	1	0	1	0	0	0	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0227	1	1	0	0	0	0	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0228	1	0	0	0	0	1	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0229	1	1	0	0	0	0	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0230	1	0	0	0	0	1	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0231	1	0	1	0	0	0	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0232	1	0	0	0	0	1	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0233	1	1	0	0	0	0	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0234	1	1	0	0	0	0	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0235	1	1	0	0	0	0	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0236	1	1	0	0	0	0	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0237	1	0	0	1	0	0	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0238	1	1	0	0	0	0	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0239	1	0	0	0	0	1	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0240	1	1	0	0	0	0	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0241	1	1	0	0	0	0	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0242	1	1	0	0	0	0	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	g0243	1	1	0	0	0	0	CAPG	chr2	85389753	85415366
CAPN10_chr2_240581734_240604104	0/1	g0001	93	19	10	55	2	6	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0002	57	4	9	43	1	0	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0003	25	5	7	4	4	5	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0004	17	0	1	11	0	5	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0005	16	1	9	3	0	3	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0006	15	0	13	2	0	0	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0007	15	0	1	6	2	6	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0008	14	0	6	5	1	2	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0009	8	8	0	0	0	0	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0010	6	6	0	0	0	0	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0011	6	0	2	0	4	0	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0012	6	0	0	6	0	0	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0013	5	4	1	0	0	0	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0014	5	0	0	5	0	0	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0015	5	0	1	0	0	4	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0016	5	5	0	0	0	0	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0017	4	3	1	0	0	0	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0018	3	0	0	3	0	0	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0019	3	0	0	3	0	0	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0020	3	3	0	0	0	0	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0021	3	3	0	0	0	0	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0022	3	0	0	3	0	0	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0023	3	1	2	0	0	0	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	g0024	3	0	3	0	0	0	CAPN10	chr2	240581734	240604104