JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CAPS2_chr12_75270979_75335324	0/0	g0308	1	1	0	0	0	0	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	g0309	1	0	0	0	0	1	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	g0310	1	0	0	0	0	1	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	g0311	1	1	0	0	0	0	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	g0312	1	1	0	0	0	0	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	g0313	1	1	0	0	0	0	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	g0314	1	1	0	0	0	0	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	g0315	1	1	0	0	0	0	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	g0316	1	1	0	0	0	0	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	g0317	1	0	1	0	0	0	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	1/0	g0318	1	0	0	0	0	0	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	g0319	1	1	0	0	0	0	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	g0320	1	1	0	0	0	0	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	g0321	1	1	0	0	0	0	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	g0322	1	1	0	0	0	0	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	g0323	1	1	0	0	0	0	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	g0324	1	0	0	1	0	0	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	g0325	1	1	0	0	0	0	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	g0326	1	1	0	0	0	0	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	g0327	1	0	0	1	0	0	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	g0328	1	0	0	1	0	0	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	g0329	1	0	0	1	0	0	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	g0330	1	0	1	0	0	0	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	g0331	1	1	0	0	0	0	CAPS2	chr12	75270979	75335324
CAPSL_chr5_35899288_35943622	0/0	g0001	11	0	3	8	0	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0002	11	0	3	7	0	1	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0003	10	1	1	3	4	1	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0004	7	0	0	4	0	3	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0005	6	0	0	6	0	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0006	5	0	1	3	0	1	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0007	5	0	1	1	0	3	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0008	5	0	4	0	1	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0009	4	0	0	3	0	1	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0010	4	0	0	4	0	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0011	4	0	1	3	0	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0012	4	0	2	0	2	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0013	3	3	0	0	0	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0014	3	0	0	3	0	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0015	3	0	2	1	0	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0016	3	0	0	3	0	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0017	3	1	2	0	0	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0018	3	0	0	3	0	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0019	3	0	1	0	1	1	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0020	3	0	0	3	0	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0021	3	3	0	0	0	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0022	3	2	1	0	0	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0023	3	3	0	0	0	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0024	3	0	0	3	0	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0025	3	0	2	1	0	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0026	3	0	3	0	0	0	CAPSL	chr5	35899288	35943622