JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CAPSL_chr5_35899288_35943622	0/0	g0277	1	1	0	0	0	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0278	1	1	0	0	0	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0279	1	1	0	0	0	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0280	1	1	0	0	0	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0281	1	1	0	0	0	0	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	g0282	1	1	0	0	0	0	CAPSL	chr5	35899288	35943622
CAPS_chr19_5909254_5921211	1/1	g0001	367	80	66	164	11	44	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	g0002	21	11	3	3	0	4	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	g0003	3	3	0	0	0	0	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	g0004	2	0	0	2	0	0	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	g0005	1	0	0	1	0	0	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	g0006	1	0	1	0	0	0	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	g0007	1	0	0	0	1	0	CAPS	chr19	5909254	5921211
CAPZA1_chr1_112614832_112676616	0/0	g0001	6	0	4	2	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0002	4	0	1	3	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0003	3	1	2	0	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0004	3	0	0	3	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0005	3	3	0	0	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0006	2	0	0	2	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0007	2	0	0	2	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0008	2	0	2	0	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0009	2	2	0	0	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0010	2	0	0	2	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0011	2	0	0	0	0	2	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0012	2	0	2	0	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0013	1	1	0	0	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0014	1	1	0	0	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0015	1	0	0	1	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0016	1	1	0	0	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0017	1	1	0	0	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0018	1	1	0	0	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0019	1	1	0	0	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0020	1	1	0	0	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0021	1	0	1	0	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0022	1	0	1	0	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0023	1	1	0	0	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0024	1	1	0	0	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0025	1	1	0	0	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0026	1	1	0	0	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0027	1	0	0	1	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0028	1	1	0	0	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0029	1	0	0	0	0	1	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0030	1	0	0	1	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0031	1	0	0	1	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0032	1	0	0	1	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0033	1	0	1	0	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0034	1	0	1	0	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0035	1	0	0	1	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0036	1	0	1	0	0	0	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	g0037	1	0	0	1	0	0	CAPZA1	chr1	112614832	112676616