Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AAMP_chr2_218259129_218275137	0/0	g0054	1	1	0	0	0	0	AAMP	chr2	218259129	218275137
AAMP_chr2_218259129_218275137	0/0	g0055	1	0	0	1	0	0	AAMP	chr2	218259129	218275137
AAMP_chr2_218259129_218275137	0/0	g0056	1	1	0	0	0	0	AAMP	chr2	218259129	218275137
AANAT_chr17_76462603_76475117	1/1	g0001	345	71	69	148	15	40	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	g0002	46	8	3	33	0	2	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	g0003	5	0	0	5	0	0	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	g0004	5	5	0	0	0	0	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	g0005	4	4	0	0	0	0	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	g0006	3	0	3	0	0	0	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	g0007	3	0	0	0	0	3	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	g0008	3	0	2	0	1	0	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	g0009	2	1	1	0	0	0	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	g0010	2	0	0	2	0	0	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	g0011	2	0	0	2	0	0	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	g0012	1	1	0	0	0	0	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	g0013	1	0	0	1	0	0	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	g0014	1	0	0	1	0	0	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	g0015	1	0	0	0	0	1	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	g0016	1	1	0	0	0	0	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	g0017	1	1	0	0	0	0	AANAT	chr17	76462603	76475117
AAR2_chr20_36231478_36261933	0/0	g0001	29	1	8	15	2	3	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0002	9	2	2	4	0	1	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0003	7	0	1	6	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0004	7	1	1	5	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0005	7	6	1	0	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0006	6	6	0	0	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0007	5	0	0	3	0	2	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0008	5	0	2	3	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0009	4	0	0	4	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0010	4	0	3	1	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0011	4	3	0	1	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0012	4	3	1	0	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0013	3	0	2	1	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0014	3	0	0	3	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0015	2	0	0	2	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0016	2	0	0	2	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0017	2	0	0	2	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0018	2	0	1	1	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0019	2	0	0	0	2	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0020	2	0	2	0	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0021	2	0	0	2	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0022	2	0	0	0	0	2	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/1	g0023	2	0	0	0	1	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0024	2	0	0	2	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0025	2	0	2	0	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0026	2	1	1	0	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0027	2	0	0	2	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0028	2	2	0	0	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0029	2	0	1	1	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0030	2	2	0	0	0	0	AAR2	chr20	36231478	36261933