JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CARD16_chr11_105036563_105050335	0/0	g0026	1	1	0	0	0	0	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	g0027	1	0	0	1	0	0	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	g0028	1	0	1	0	0	0	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	g0029	1	1	0	0	0	0	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	g0030	1	0	1	0	0	0	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	g0031	1	0	0	1	0	0	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	g0032	1	1	0	0	0	0	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	g0033	1	0	0	1	0	0	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	g0034	1	0	0	0	0	1	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	g0035	1	0	0	0	1	0	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	g0036	1	0	0	1	0	0	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	g0037	1	0	0	0	0	1	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	g0038	1	1	0	0	0	0	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	g0039	1	1	0	0	0	0	CARD16	chr11	105036563	105050335
CARD18_chr11_105132714_105144769	0/0	g0001	149	22	23	81	5	18	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/1	g0002	136	29	28	67	7	4	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	1/0	g0003	79	23	10	38	1	6	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	g0004	28	11	12	0	0	5	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	g0005	8	5	3	0	0	0	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	g0006	5	0	0	1	0	4	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	g0007	4	0	0	1	0	3	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	g0008	3	0	3	0	0	0	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	g0009	3	0	0	3	0	0	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	g0010	3	1	2	0	0	0	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	g0011	3	1	0	0	0	2	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	g0012	2	2	0	0	0	0	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	g0013	2	0	0	2	0	0	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	g0014	2	0	0	0	0	2	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	g0015	1	0	0	1	0	0	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	g0016	1	1	0	0	0	0	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	g0017	1	0	0	0	1	0	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	g0018	1	0	1	0	0	0	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	g0019	1	1	0	0	0	0	CARD18	chr11	105132714	105144769
CARD19_chr9_93091217_93118283	0/1	g0001	38	0	14	16	3	4	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	g0002	22	3	0	17	0	2	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	g0003	14	0	0	12	0	2	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	g0004	11	0	6	2	2	1	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	g0005	11	10	1	0	0	0	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	g0006	9	1	1	6	0	1	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	g0007	9	0	0	8	0	1	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	g0008	9	9	0	0	0	0	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	g0009	7	6	1	0	0	0	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	g0010	6	0	0	6	0	0	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	g0011	6	0	1	0	0	5	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	g0012	5	0	4	0	0	1	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	g0013	5	0	0	5	0	0	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	g0014	5	2	1	1	0	1	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	g0015	5	0	3	0	2	0	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	g0016	4	0	0	4	0	0	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	g0017	4	3	1	0	0	0	CARD19	chr9	93091217	93118283