JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CARD19_chr9_93091217_93118283	0/0	g0168	1	0	1	0	0	0	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	g0169	1	0	1	0	0	0	CARD19	chr9	93091217	93118283
CARD6_chr5_40836367_40860354	0/1	g0001	31	3	9	15	1	2	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0002	20	2	2	13	0	3	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	1/0	g0003	16	0	3	11	0	1	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0004	15	0	4	8	0	3	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0005	12	1	4	1	3	3	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0006	10	0	0	8	0	2	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0007	10	6	0	3	0	1	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0008	9	0	0	9	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0009	8	0	3	3	0	2	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0010	7	0	6	1	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0011	7	0	4	1	2	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0012	6	0	1	4	0	1	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0013	6	1	2	3	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0014	5	0	1	0	0	4	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0015	5	0	3	2	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0016	4	0	0	4	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0017	4	0	0	4	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0018	4	0	4	0	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0019	4	0	2	2	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0020	4	0	0	0	2	2	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0021	4	0	1	2	0	1	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0022	4	1	3	0	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0023	4	0	0	4	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0024	4	4	0	0	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0025	4	0	2	0	1	1	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0026	4	4	0	0	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0027	4	0	0	4	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0028	3	0	0	3	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0029	3	0	0	3	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0030	3	2	0	1	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0031	3	0	1	0	0	2	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0032	3	0	0	3	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0033	3	0	0	3	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0034	3	0	0	2	0	1	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0035	3	3	0	0	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0036	3	0	0	3	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0037	3	0	3	0	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0038	2	2	0	0	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0039	2	0	1	1	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0040	2	0	0	2	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0041	2	2	0	0	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0042	2	2	0	0	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0043	2	2	0	0	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0044	2	2	0	0	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0045	2	0	1	1	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0046	2	0	0	2	0	0	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0047	2	0	0	1	0	1	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	g0048	2	0	0	2	0	0	CARD6	chr5	40836367	40860354