JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CARHSP1_chr16_8847947_8874006	0/0	g0402	1	0	0	0	0	1	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0403	1	1	0	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0404	1	1	0	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0405	1	1	0	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0406	1	1	0	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0407	1	0	1	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0408	1	1	0	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0409	1	1	0	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0410	1	1	0	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0411	1	1	0	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0412	1	0	1	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0413	1	0	1	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0414	1	1	0	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0415	1	1	0	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0416	1	0	0	1	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0417	1	0	1	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0418	1	0	0	1	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0419	1	0	1	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0420	1	0	1	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0421	1	0	0	0	1	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0422	1	0	1	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0423	1	0	0	0	0	1	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0424	1	1	0	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0425	1	0	0	1	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0426	1	0	0	1	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0427	1	1	0	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0428	1	1	0	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	1/0	g0429	1	0	0	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0430	1	0	0	0	0	1	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0431	1	0	1	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0432	1	0	0	0	0	1	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0433	1	0	1	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0434	1	0	1	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0435	1	0	0	0	1	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0436	1	0	1	0	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0437	1	0	0	1	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0438	1	0	0	1	0	0	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	g0439	1	1	0	0	0	0	CARHSP1	chr16	8847947	8874006
CARM1_chr19_10866553_10928075	0/0	g0001	3	0	0	3	0	0	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	g0002	2	0	2	0	0	0	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	g0003	2	0	2	0	0	0	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	g0004	2	0	0	2	0	0	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	g0005	2	0	2	0	0	0	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	g0006	2	0	1	0	1	0	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	g0007	2	2	0	0	0	0	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	g0008	2	1	1	0	0	0	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	g0009	1	0	0	1	0	0	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	g0010	1	1	0	0	0	0	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	g0011	1	0	1	0	0	0	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	g0012	1	1	0	0	0	0	CARM1	chr19	10866553	10928075