JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CARMIL2_chr16_67640144_67662569	0/0	g0032	2	2	0	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0033	1	0	0	1	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0034	1	0	0	0	0	1	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0035	1	1	0	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0036	1	1	0	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0037	1	1	0	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0038	1	1	0	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0039	1	1	0	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0040	1	0	0	0	0	1	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0041	1	0	0	0	0	1	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0042	1	1	0	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0043	1	0	0	1	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0044	1	0	1	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0045	1	0	0	1	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0046	1	1	0	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0047	1	0	0	1	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0048	1	0	0	1	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0049	1	0	0	1	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0050	1	1	0	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0051	1	0	0	1	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0052	1	0	0	0	1	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0053	1	0	0	1	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0054	1	0	0	1	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0055	1	1	0	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0056	1	0	0	0	0	1	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0057	1	0	0	1	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0058	1	0	0	1	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0059	1	0	0	1	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0060	1	0	0	0	1	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0061	1	1	0	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0062	1	1	0	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0063	1	0	0	0	0	1	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0064	1	0	0	0	0	1	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0065	1	1	0	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0066	1	1	0	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0067	1	1	0	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0068	1	0	0	0	0	1	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0069	1	0	0	1	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0070	1	1	0	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0071	1	0	0	1	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0072	1	1	0	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0073	1	1	0	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0074	1	1	0	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0075	1	1	0	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0076	1	1	0	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0077	1	0	0	0	0	1	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	g0078	1	1	0	0	0	0	CARMIL2	chr16	67640144	67662569
CARMIL3_chr14_24047009_24074729	0/0	g0001	44	2	18	1	4	19	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	g0002	41	3	1	33	2	2	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	g0003	32	0	1	30	1	0	CARMIL3	chr14	24047009	24074729