JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CARS2_chr13_110636417_110711116	0/0	g0333	1	0	0	1	0	0	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	g0334	1	0	1	0	0	0	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	g0335	1	0	1	0	0	0	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	g0336	1	0	0	1	0	0	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	g0337	1	0	0	0	1	0	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	g0338	1	0	0	0	1	0	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	g0339	1	0	0	1	0	0	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	g0340	1	0	1	0	0	0	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	g0341	1	0	0	0	1	0	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	g0342	1	0	0	1	0	0	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	g0343	1	1	0	0	0	0	CARS2	chr13	110636417	110711116
CARTPT_chr5_71714275_71726045	0/1	g0001	269	42	57	121	15	33	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	1/0	g0002	97	20	7	59	0	10	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/0	g0003	75	10	15	45	0	5	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/0	g0004	12	11	1	0	0	0	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/0	g0005	4	4	0	0	0	0	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/0	g0006	4	3	1	0	0	0	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/0	g0007	3	3	0	0	0	0	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/0	g0008	2	0	0	0	0	2	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/0	g0009	2	2	0	0	0	0	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/0	g0010	2	0	2	0	0	0	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/0	g0011	1	1	0	0	0	0	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/0	g0012	1	0	0	0	1	0	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/0	g0013	1	0	0	1	0	0	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/0	g0014	1	0	1	0	0	0	CARTPT	chr5	71714275	71726045
CASC3_chr17_40135537_40177171	0/0	g0001	3	0	1	0	1	1	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0002	3	0	1	0	1	1	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0003	3	0	2	0	1	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0004	2	2	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0005	2	2	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0006	2	0	1	1	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0007	2	0	0	0	2	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0008	2	0	1	0	0	1	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0009	2	0	2	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0010	2	2	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0011	2	0	0	0	2	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0012	2	2	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0013	2	2	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0014	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0015	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0016	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0017	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0018	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0019	1	0	1	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0020	1	0	1	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0021	1	0	1	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0022	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0023	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0024	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/1	g0025	1	0	0	0	0	0	CASC3	chr17	40135537	40177171