JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CASC3_chr17_40135537_40177171	0/0	g0226	1	0	0	0	0	1	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0227	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0228	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0229	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0230	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0231	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0232	1	0	1	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0233	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0234	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0235	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0236	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0237	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0238	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0239	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0240	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0241	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0242	1	0	1	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0243	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0244	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0245	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0246	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0247	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0248	1	1	0	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0249	1	0	1	0	0	0	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	g0250	1	0	0	0	1	0	CASC3	chr17	40135537	40177171
CASD1_chr7_94504809_94562019	0/0	g0001	14	0	1	11	0	2	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0002	13	0	2	11	0	0	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0003	9	0	2	7	0	0	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0004	5	0	0	5	0	0	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0005	5	0	0	5	0	0	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0006	5	5	0	0	0	0	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0007	5	1	4	0	0	0	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0008	5	5	0	0	0	0	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0009	5	5	0	0	0	0	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0010	4	0	0	4	0	0	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0011	4	0	1	2	1	0	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0012	4	0	0	4	0	0	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0013	3	0	0	3	0	0	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0014	3	0	0	2	0	1	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0015	3	0	3	0	0	0	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0016	3	0	0	3	0	0	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0017	3	3	0	0	0	0	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0018	3	0	1	0	1	1	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0019	3	0	1	0	2	0	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0020	3	0	3	0	0	0	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0021	3	0	0	3	0	0	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0022	3	0	0	3	0	0	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0023	2	2	0	0	0	0	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0024	2	0	0	2	0	0	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	g0025	2	0	1	1	0	0	CASD1	chr7	94504809	94562019