JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CASP1_chr11_105020508_105040144	0/0	g0041	1	1	0	0	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0042	1	0	0	0	0	1	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0043	1	1	0	0	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0044	1	0	0	1	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0045	1	0	0	1	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0046	1	0	0	1	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0047	1	0	1	0	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0048	1	0	0	1	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0049	1	0	0	1	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0050	1	0	0	1	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0051	1	0	1	0	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0052	1	0	0	1	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0053	1	0	0	1	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0054	1	1	0	0	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0055	1	0	0	1	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0056	1	0	0	1	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0057	1	1	0	0	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0058	1	1	0	0	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0059	1	0	1	0	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0060	1	0	0	0	1	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0061	1	0	0	0	0	1	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0062	1	0	0	1	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0063	1	1	0	0	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0064	1	1	0	0	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0065	1	1	0	0	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0066	1	1	0	0	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0067	1	1	0	0	0	0	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	g0068	1	0	0	1	0	0	CASP1	chr11	105020508	105040144
CASP2_chr7_143283351_143312696	0/0	g0001	48	8	16	17	1	6	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	g0002	10	1	3	1	2	3	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	g0003	9	5	2	1	0	1	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	g0004	9	0	1	7	0	1	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	1/0	g0005	9	0	0	8	0	0	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	g0006	7	6	1	0	0	0	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	g0007	6	0	0	4	0	2	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	g0008	6	0	4	2	0	0	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	g0009	5	5	0	0	0	0	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	g0010	4	0	3	0	1	0	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	g0011	4	3	1	0	0	0	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	g0012	3	3	0	0	0	0	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	g0013	3	1	0	0	2	0	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	g0014	3	1	1	0	0	1	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	g0015	3	1	1	0	1	0	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	g0016	2	1	0	0	1	0	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	g0017	2	0	0	1	0	1	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	g0018	2	2	0	0	0	0	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	g0019	2	0	2	0	0	0	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	g0020	2	0	2	0	0	0	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	g0021	2	0	2	0	0	0	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	g0022	2	2	0	0	0	0	CASP2	chr7	143283351	143312696