JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CASP5_chr11_104989243_105028168	0/0	g0307	1	0	0	1	0	0	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	g0308	1	0	0	1	0	0	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	g0309	1	0	0	1	0	0	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	g0310	1	0	1	0	0	0	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	g0311	1	0	1	0	0	0	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	g0312	1	0	1	0	0	0	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	g0313	1	1	0	0	0	0	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	g0314	1	1	0	0	0	0	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	g0315	1	0	0	1	0	0	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	g0316	1	0	0	0	0	1	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	g0317	1	0	0	0	0	1	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	g0318	1	1	0	0	0	0	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	g0319	1	0	1	0	0	0	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	g0320	1	1	0	0	0	0	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	g0321	1	1	0	0	0	0	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	g0322	1	1	0	0	0	0	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	g0323	1	1	0	0	0	0	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	g0324	1	1	0	0	0	0	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	g0325	1	1	0	0	0	0	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	g0326	1	1	0	0	0	0	CASP5	chr11	104989243	105028168
CASP6_chr4_109683628_109708445	0/0	g0001	50	1	11	32	2	4	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/1	g0002	42	6	9	19	1	6	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0003	13	0	3	10	0	0	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0004	10	0	0	10	0	0	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0005	9	5	0	0	0	4	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0006	7	0	2	4	0	1	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0007	6	6	0	0	0	0	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0008	6	0	0	6	0	0	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0009	6	2	2	0	1	1	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0010	5	5	0	0	0	0	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0011	5	5	0	0	0	0	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0012	5	0	0	4	1	0	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0013	5	4	0	0	0	1	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0014	5	0	0	2	3	0	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0015	5	0	0	5	0	0	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0016	4	0	0	2	0	2	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0017	4	0	0	3	0	1	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0018	4	1	0	3	0	0	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0019	4	2	2	0	0	0	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0020	3	0	1	0	0	2	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0021	3	0	3	0	0	0	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0022	3	3	0	0	0	0	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0023	3	0	0	3	0	0	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0024	3	0	0	3	0	0	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0025	3	0	0	3	0	0	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	1/0	g0026	3	0	0	0	0	2	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0027	3	0	0	3	0	0	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0028	3	3	0	0	0	0	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0029	3	0	0	3	0	0	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	g0030	2	0	2	0	0	0	CASP6	chr4	109683628	109708445