JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CASP9_chr1_15486401_15529215	0/0	g0226	1	1	0	0	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0227	1	0	1	0	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0228	1	1	0	0	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0229	1	1	0	0	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0230	1	1	0	0	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0231	1	1	0	0	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0232	1	1	0	0	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0233	1	1	0	0	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0234	1	0	0	1	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0235	1	0	0	1	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0236	1	0	0	1	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0237	1	1	0	0	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0238	1	0	1	0	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0239	1	1	0	0	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0240	1	0	0	0	0	1	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0241	1	0	0	0	0	1	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0242	1	0	0	0	0	1	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0243	1	1	0	0	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0244	1	1	0	0	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0245	1	1	0	0	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0246	1	1	0	0	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0247	1	1	0	0	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0248	1	1	0	0	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0249	1	0	1	0	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0250	1	0	0	1	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0251	1	0	0	1	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0252	1	0	0	1	0	0	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	g0253	1	1	0	0	0	0	CASP9	chr1	15486401	15529215
CASQ1_chr1_160185575_160206886	0/0	g0001	60	1	18	26	1	14	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/1	g0002	60	2	14	35	4	4	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	g0003	30	0	7	12	2	9	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	g0004	17	0	3	13	0	1	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	g0005	15	0	0	15	0	0	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	g0006	14	14	0	0	0	0	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	g0007	13	0	4	6	0	3	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	g0008	8	8	0	0	0	0	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	g0009	8	1	5	0	0	2	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	g0010	8	1	0	7	0	0	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	g0011	7	0	0	7	0	0	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	g0012	7	0	1	6	0	0	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	g0013	5	0	5	0	0	0	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	1/0	g0014	5	4	0	0	0	0	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	g0015	5	0	0	5	0	0	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	g0016	5	0	2	0	2	1	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	g0017	4	4	0	0	0	0	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	g0018	4	4	0	0	0	0	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	g0019	4	4	0	0	0	0	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	g0020	4	0	0	4	0	0	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	g0021	3	0	0	3	0	0	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	g0022	3	0	1	2	0	0	CASQ1	chr1	160185575	160206886