JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CASS4_chr20_56407260_56465382	0/0	g0323	1	0	0	0	1	0	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	g0324	1	1	0	0	0	0	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	g0325	1	1	0	0	0	0	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	g0326	1	0	1	0	0	0	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	g0327	1	0	0	0	1	0	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	g0328	1	1	0	0	0	0	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	g0329	1	1	0	0	0	0	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	g0330	1	1	0	0	0	0	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	g0331	1	0	0	0	1	0	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	g0332	1	0	1	0	0	0	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	g0333	1	1	0	0	0	0	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	g0334	1	1	0	0	0	0	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	g0335	1	1	0	0	0	0	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	g0336	1	1	0	0	0	0	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	g0337	1	1	0	0	0	0	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	g0338	1	1	0	0	0	0	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	g0339	1	1	0	0	0	0	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	g0340	1	1	0	0	0	0	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	g0341	1	1	0	0	0	0	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	g0342	1	1	0	0	0	0	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	g0343	1	1	0	0	0	0	CASS4	chr20	56407260	56465382
CASTOR1_chr22_30280117_30294505	0/1	g0001	235	36	41	120	10	27	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	1/0	g0002	55	5	16	21	4	8	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0003	48	9	8	21	3	7	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0004	31	27	4	0	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0005	13	0	3	9	1	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0006	5	5	0	0	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0007	4	0	0	4	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0008	4	0	4	0	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0009	3	2	1	0	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0010	2	0	0	0	0	2	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0011	2	0	0	2	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0012	2	0	0	2	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0013	2	1	1	0	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0014	1	1	0	0	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0015	1	0	0	1	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0016	1	0	0	1	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0017	1	1	0	0	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0018	1	0	1	0	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0019	1	0	0	1	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0020	1	0	0	1	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0021	1	0	0	1	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0022	1	0	1	0	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0023	1	1	0	0	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0024	1	0	0	1	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0025	1	0	0	1	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0026	1	0	0	1	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0027	1	1	0	0	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0028	1	1	0	0	0	0	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	g0029	1	1	0	0	0	0	CASTOR1	chr22	30280117	30294505