JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CASTOR2_chr7_74959705_75036528	0/0	g0199	1	1	0	0	0	0	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0200	1	0	0	0	1	0	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/1	g0201	1	0	0	0	0	0	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0202	1	1	0	0	0	0	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0203	1	0	0	1	0	0	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0204	1	0	0	1	0	0	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0205	1	0	0	1	0	0	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0206	1	0	0	0	0	1	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0207	1	0	1	0	0	0	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0208	1	0	1	0	0	0	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0209	1	0	1	0	0	0	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0210	1	0	0	0	0	1	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0211	1	0	0	0	0	1	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0212	1	0	0	0	0	1	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0213	1	0	0	0	0	1	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0214	1	0	0	0	0	1	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0215	1	0	1	0	0	0	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0216	1	0	1	0	0	0	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	1/0	g0217	1	0	0	0	0	0	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0218	1	0	0	0	0	1	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0219	1	0	0	0	0	1	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0220	1	0	0	1	0	0	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0221	1	0	1	0	0	0	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0222	1	0	1	0	0	0	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0223	1	0	0	1	0	0	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0224	1	0	1	0	0	0	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0225	1	0	1	0	0	0	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	g0226	1	1	0	0	0	0	CASTOR2	chr7	74959705	75036528
CAST_chr5_96657376_96779683	0/0	g0001	3	0	1	2	0	0	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	g0002	3	0	0	3	0	0	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	g0003	2	0	0	2	0	0	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	g0004	2	0	2	0	0	0	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	g0005	2	0	0	2	0	0	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	g0006	2	0	0	2	0	0	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	g0007	2	2	0	0	0	0	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	g0008	2	0	0	2	0	0	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	g0009	2	0	0	2	0	0	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	g0010	2	0	0	0	2	0	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	g0011	2	0	1	0	1	0	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	g0012	2	0	0	0	2	0	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	g0013	2	2	0	0	0	0	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	g0014	2	0	0	0	2	0	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	g0015	2	0	0	2	0	0	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	g0016	2	0	2	0	0	0	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	g0017	1	1	0	0	0	0	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	g0018	1	0	0	1	0	0	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	g0019	1	0	0	1	0	0	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	g0020	1	1	0	0	0	0	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	g0021	1	0	0	0	0	1	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	g0022	1	0	0	0	0	1	CAST	chr5	96657376	96779683