JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CASZ1_chr1_10631604_10801646	0/0	g0233	1	0	1	0	0	0	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	g0234	1	0	0	1	0	0	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	g0235	1	0	0	0	0	1	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	g0236	1	0	0	0	0	1	CASZ1	chr1	10631604	10801646
CATIP_chr2_218351857_218373094	0/0	g0001	37	0	11	20	1	5	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0002	14	0	4	8	1	1	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0003	8	0	4	4	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0004	7	6	1	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0005	6	0	1	2	0	3	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0006	5	0	2	3	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0007	5	1	1	3	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0008	4	0	0	4	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0009	4	0	2	1	0	1	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0010	4	4	0	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0011	4	4	0	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0012	4	0	1	2	1	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0013	4	0	3	0	0	1	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0014	3	2	1	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0015	3	0	2	1	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0016	3	0	0	3	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0017	3	3	0	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0018	3	0	0	0	1	2	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0019	3	0	1	0	1	1	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0020	2	0	0	1	0	1	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0021	2	1	0	1	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0022	2	1	0	0	0	1	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0023	2	1	0	1	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0024	2	0	2	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0025	2	0	2	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0026	2	0	2	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0027	2	0	1	0	1	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0028	2	0	1	0	1	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0029	2	0	0	0	0	2	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0030	2	0	0	2	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0031	2	0	2	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0032	2	0	2	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0033	2	0	0	0	1	1	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0034	2	1	0	0	0	1	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0035	2	2	0	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0036	2	0	0	1	0	1	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0037	2	0	0	2	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0038	2	2	0	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0039	2	2	0	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0040	2	2	0	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0041	2	0	0	1	0	1	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0042	2	0	0	2	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0043	2	2	0	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	1/0	g0044	2	1	0	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0045	2	0	1	0	0	1	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0046	1	1	0	0	0	0	CATIP	chr2	218351857	218373094