JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CATIP_chr2_218351857_218373094	0/0	g0197	1	0	0	1	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0198	1	0	0	0	0	1	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0199	1	0	0	0	0	1	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0200	1	0	0	1	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0201	1	0	0	1	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0202	1	0	0	1	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0203	1	0	0	1	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0204	1	0	0	1	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0205	1	0	1	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0206	1	0	0	1	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0207	1	0	0	1	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0208	1	0	1	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0209	1	0	0	1	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0210	1	0	0	1	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0211	1	0	0	0	0	1	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0212	1	1	0	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0213	1	0	0	1	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0214	1	0	0	0	1	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0215	1	0	1	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0216	1	0	0	0	0	1	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0217	1	0	0	1	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0218	1	1	0	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0219	1	1	0	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0220	1	1	0	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0221	1	1	0	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0222	1	0	0	1	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0223	1	1	0	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0224	1	0	0	0	1	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0225	1	0	1	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0226	1	0	0	0	0	1	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0227	1	1	0	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0228	1	0	1	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0229	1	1	0	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0230	1	1	0	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0231	1	0	0	1	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0232	1	0	0	1	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0233	1	0	0	1	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0234	1	1	0	0	0	0	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	g0235	1	0	0	1	0	0	CATIP	chr2	218351857	218373094
CATSPER1_chr11_66011752_66031479	0/0	g0001	67	10	11	37	1	8	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0002	25	1	3	20	1	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0003	25	2	5	13	2	3	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/1	g0004	20	0	1	5	2	11	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0005	12	0	9	3	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0006	11	0	0	11	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0007	10	0	2	3	2	3	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0008	9	0	1	8	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0009	8	1	5	0	2	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0010	7	7	0	0	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0011	7	0	0	7	0	0	CATSPER1	chr11	66011752	66031479