JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CATSPER1_chr11_66011752_66031479	0/0	g0112	1	0	0	0	0	1	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0113	1	0	0	0	0	1	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0114	1	1	0	0	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0115	1	0	0	1	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0116	1	0	0	1	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0117	1	0	0	1	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0118	1	0	0	1	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0119	1	0	1	0	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0120	1	0	0	1	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0121	1	0	0	0	1	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0122	1	1	0	0	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0123	1	1	0	0	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0124	1	0	0	1	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0125	1	1	0	0	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0126	1	1	0	0	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0127	1	1	0	0	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0128	1	1	0	0	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0129	1	0	1	0	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0130	1	0	0	1	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0131	1	0	0	0	0	1	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0132	1	0	0	1	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0133	1	1	0	0	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0134	1	0	0	1	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0135	1	0	0	1	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0136	1	1	0	0	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0137	1	1	0	0	0	0	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	g0138	1	0	1	0	0	0	CATSPER1	chr11	66011752	66031479
CATSPER2_chr15_43623503_43653844	1/0	g0001	66	0	11	36	4	14	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	g0002	18	0	5	7	2	4	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	g0003	12	0	1	11	0	0	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	g0004	10	0	1	7	1	1	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	g0005	7	0	4	3	0	0	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	g0006	7	0	2	4	0	1	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	g0007	7	0	0	7	0	0	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	g0008	6	0	3	3	0	0	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	g0009	5	0	0	5	0	0	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	g0010	5	0	0	5	0	0	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	g0011	5	0	0	5	0	0	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	g0012	4	4	0	0	0	0	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	g0013	4	3	1	0	0	0	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	g0014	4	0	3	0	0	1	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	g0015	3	0	2	0	1	0	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	g0016	3	0	0	3	0	0	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	g0017	3	0	1	2	0	0	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	g0018	3	0	0	3	0	0	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	g0019	3	0	1	0	2	0	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	g0020	3	0	0	3	0	0	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	g0021	3	0	0	3	0	0	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	g0022	3	3	0	0	0	0	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	g0023	3	0	1	1	0	1	CATSPER2	chr15	43623503	43653844