JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CATSPER3_chr5_134962907_135016696	0/0	g0268	1	1	0	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0269	1	0	0	0	1	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0270	1	1	0	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0271	1	0	1	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0272	1	0	0	0	0	1	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0273	1	0	1	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0274	1	0	0	1	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0275	1	1	0	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0276	1	0	0	0	0	1	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0277	1	0	0	0	1	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0278	1	0	1	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0279	1	0	1	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0280	1	0	0	1	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0281	1	0	0	0	0	1	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0282	1	0	0	1	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0283	1	0	0	0	0	1	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0284	1	1	0	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0285	1	1	0	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0286	1	1	0	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0287	1	0	1	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0288	1	1	0	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0289	1	1	0	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0290	1	1	0	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0291	1	1	0	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0292	1	0	1	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0293	1	1	0	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0294	1	1	0	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0295	1	0	1	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0296	1	0	1	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0297	1	1	0	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0298	1	1	0	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0299	1	1	0	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0300	1	0	1	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0301	1	1	0	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0302	1	1	0	0	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0303	1	0	0	1	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0304	1	0	0	1	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0305	1	0	0	1	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0306	1	0	0	1	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0307	1	0	0	1	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0308	1	0	0	1	0	0	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	g0309	1	0	0	1	0	0	CATSPER3	chr5	134962907	135016696
CATSPER4_chr1_26185602_26207964	1/0	g0001	65	3	6	48	0	7	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	g0002	36	1	8	19	3	5	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	g0003	14	5	3	1	3	2	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	g0004	11	0	1	9	0	1	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	g0005	9	0	9	0	0	0	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	g0006	9	0	2	7	0	0	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	g0007	7	0	0	7	0	0	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	g0008	7	0	4	2	1	0	CATSPER4	chr1	26185602	26207964