JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CATSPERG_chr19_38330830_38375943	0/0	g0360	1	1	0	0	0	0	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	g0361	1	1	0	0	0	0	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	g0362	1	1	0	0	0	0	CATSPERG	chr19	38330830	38375943
CATSPERZ_chr11_64295358_64309770	0/0	g0001	83	12	14	52	3	2	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0002	61	14	18	16	5	8	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/1	g0003	46	1	10	19	3	12	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0004	43	24	2	13	0	4	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0005	19	2	4	10	3	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0006	15	2	3	8	0	2	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0007	12	0	5	4	0	3	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0008	9	1	2	6	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0009	9	9	0	0	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0010	7	0	2	5	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0011	7	0	2	1	0	4	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0012	7	7	0	0	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0013	6	1	2	3	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0014	5	0	3	1	0	1	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0015	5	5	0	0	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0016	5	0	0	5	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0017	4	0	0	4	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0018	4	0	0	4	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0019	3	0	0	3	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0020	3	0	2	0	0	1	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0021	2	0	0	2	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0022	2	1	1	0	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0023	2	1	1	0	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0024	2	0	1	1	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0025	2	2	0	0	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0026	2	1	0	0	0	1	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0027	2	2	0	0	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0028	2	2	0	0	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0029	2	0	0	1	0	1	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0030	1	1	0	0	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0031	1	0	0	1	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0032	1	0	1	0	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0033	1	0	0	1	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0034	1	1	0	0	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0035	1	0	0	1	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0036	1	0	0	0	0	1	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0037	1	0	1	0	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0038	1	0	0	1	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0039	1	0	1	0	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0040	1	1	0	0	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0041	1	0	1	0	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0042	1	0	0	1	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0043	1	1	0	0	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0044	1	0	0	1	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0045	1	1	0	0	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0046	1	1	0	0	0	0	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	g0047	1	0	0	0	0	1	CATSPERZ	chr11	64295358	64309770