JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CAT_chr11_34433934_34477060	0/0	g0248	1	0	0	1	0	0	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	g0249	1	0	0	1	0	0	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	g0250	1	0	0	1	0	0	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	g0251	1	0	0	1	0	0	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	g0252	1	0	0	1	0	0	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	g0253	1	0	0	1	0	0	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	g0254	1	0	0	1	0	0	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	g0255	1	0	0	0	1	0	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	g0256	1	0	0	1	0	0	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	g0257	1	0	0	1	0	0	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	g0258	1	1	0	0	0	0	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	g0259	1	0	0	1	0	0	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	g0260	1	0	0	1	0	0	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	g0261	1	0	0	1	0	0	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	g0262	1	0	0	1	0	0	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	g0263	1	0	0	1	0	0	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	g0264	1	1	0	0	0	0	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	g0265	1	0	0	1	0	0	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	g0266	1	0	0	1	0	0	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	g0267	1	0	0	1	0	0	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	g0268	1	0	0	1	0	0	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	g0269	1	1	0	0	0	0	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	g0270	1	1	0	0	0	0	CAT	chr11	34433934	34477060
CAV1_chr7_116520036_116566179	0/0	g0001	3	0	0	2	0	1	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0002	2	0	2	0	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0003	2	0	0	2	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0004	2	0	1	0	1	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0005	2	2	0	0	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0006	2	0	2	0	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0007	2	2	0	0	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0008	2	0	2	0	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0009	2	0	2	0	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0010	2	0	0	2	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0011	2	0	2	0	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0012	1	1	0	0	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0013	1	1	0	0	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0014	1	1	0	0	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0015	1	1	0	0	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0016	1	0	1	0	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0017	1	0	1	0	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0018	1	1	0	0	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0019	1	1	0	0	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0020	1	0	0	0	0	1	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0021	1	0	0	0	0	1	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0022	1	0	0	1	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0023	1	0	1	0	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0024	1	1	0	0	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0025	1	1	0	0	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0026	1	1	0	0	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0027	1	1	0	0	0	0	CAV1	chr7	116520036	116566179