JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CAV1_chr7_116520036_116566179	0/0	g0328	1	0	0	0	0	1	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0329	1	1	0	0	0	0	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	g0330	1	0	0	0	0	1	CAV1	chr7	116520036	116566179
CAV2_chr7_116494738_116513541	0/0	g0001	135	21	27	67	5	15	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	1/0	g0002	51	12	12	20	0	6	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0003	49	1	4	41	1	2	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/1	g0004	39	9	13	1	3	12	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0005	6	0	4	0	1	1	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0006	5	3	2	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0007	5	5	0	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0008	5	0	0	5	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0009	4	4	0	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0010	4	4	0	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0011	3	3	0	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0012	3	0	0	2	1	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0013	3	3	0	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0014	3	0	0	0	3	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0015	3	3	0	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0016	3	3	0	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0017	3	3	0	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0018	2	1	1	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0019	2	1	1	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0020	2	2	0	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0021	2	0	2	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0022	2	0	0	0	0	2	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0023	2	2	0	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0024	2	0	0	2	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0025	2	2	0	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0026	2	0	0	0	0	2	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0027	2	0	0	2	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0028	2	0	2	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0029	1	1	0	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0030	1	1	0	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0031	1	1	0	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0032	1	1	0	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0033	1	1	0	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0034	1	1	0	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0035	1	1	0	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0036	1	0	1	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0037	1	0	0	1	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0038	1	0	1	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0039	1	1	0	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0040	1	0	0	1	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0041	1	0	0	1	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0042	1	0	0	0	0	1	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0043	1	0	0	1	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0044	1	0	0	1	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0045	1	0	0	1	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0046	1	0	0	1	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0047	1	0	0	1	0	0	CAV2	chr7	116494738	116513541