JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CAV2_chr7_116494738_116513541	0/0	g0048	1	0	1	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0049	1	0	0	0	0	1	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0050	1	0	0	1	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0051	1	0	0	1	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0052	1	0	0	1	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0053	1	0	0	1	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0054	1	1	0	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0055	1	1	0	0	0	0	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	g0056	1	0	1	0	0	0	CAV2	chr7	116494738	116513541
CAV3_chr3_8728802_8751758	0/0	g0001	40	3	9	22	1	5	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0002	38	0	7	22	2	7	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	1/0	g0003	32	0	4	23	0	4	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0004	25	0	5	15	0	5	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0005	25	1	1	23	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0006	10	10	0	0	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0007	10	0	9	1	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0008	8	0	0	8	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/1	g0009	6	0	1	3	1	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0010	6	0	1	5	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0011	6	0	0	4	0	2	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0012	6	4	2	0	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0013	6	6	0	0	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0014	5	5	0	0	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0015	5	0	0	5	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0016	5	0	2	3	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0017	5	0	4	0	0	1	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0018	4	4	0	0	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0019	4	0	0	4	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0020	4	4	0	0	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0021	4	0	0	4	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0022	4	0	0	4	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0023	4	0	0	4	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0024	4	2	1	1	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0025	4	0	1	0	2	1	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0026	3	0	0	1	1	1	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0027	3	0	1	0	0	2	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0028	3	0	3	0	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0029	3	0	1	2	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0030	3	0	0	3	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0031	3	0	0	3	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0032	3	2	0	0	1	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0033	3	0	2	1	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0034	3	0	0	3	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0035	3	0	1	2	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0036	3	0	0	3	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0037	3	0	0	0	0	3	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0038	3	0	0	3	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0039	2	2	0	0	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0040	2	0	2	0	0	0	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	g0041	2	2	0	0	0	0	CAV3	chr3	8728802	8751758