JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CAVIN2_chr2_191829310_191852088	0/0	g0112	1	1	0	0	0	0	CAVIN2	chr2	191829310	191852088
CAVIN2_chr2_191829310_191852088	0/0	g0113	1	1	0	0	0	0	CAVIN2	chr2	191829310	191852088
CAVIN3_chr11_6313946_6325501	0/1	g0001	171	31	21	92	10	16	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0002	129	13	31	64	4	17	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0003	36	4	8	22	1	1	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0004	15	9	4	0	0	2	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0005	10	6	3	0	0	1	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0006	9	7	0	1	0	1	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0007	6	6	0	0	0	0	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	1/0	g0008	6	2	3	0	0	0	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0009	5	0	0	5	0	0	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0010	5	0	0	5	0	0	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0011	4	0	1	0	3	0	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0012	4	0	0	4	0	0	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0013	4	4	0	0	0	0	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0014	2	0	1	1	0	0	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0015	2	0	2	0	0	0	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0016	2	0	0	2	0	0	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0017	2	1	1	0	0	0	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0018	1	0	1	0	0	0	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0019	1	0	0	0	0	1	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0020	1	1	0	0	0	0	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0021	1	0	0	0	0	1	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0022	1	0	1	0	0	0	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0023	1	1	0	0	0	0	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0024	1	1	0	0	0	0	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0025	1	0	0	1	0	0	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0026	1	0	0	1	0	0	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0027	1	0	0	1	0	0	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0028	1	0	0	1	0	0	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0029	1	0	1	0	0	0	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0030	1	1	0	0	0	0	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	g0031	1	1	0	0	0	0	CAVIN3	chr11	6313946	6325501
CAVIN4_chr9_100573079_100593389	0/0	g0001	54	1	5	42	1	5	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	g0002	48	3	4	33	0	8	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	g0003	37	2	24	1	6	4	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	g0004	34	10	7	12	2	3	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	g0005	26	1	7	15	0	3	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	g0006	20	0	2	9	3	6	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/1	g0007	16	3	8	0	2	2	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	g0008	13	13	0	0	0	0	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	g0009	13	4	0	7	2	0	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	g0010	9	9	0	0	0	0	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	g0011	8	0	0	8	0	0	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	g0012	8	8	0	0	0	0	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	g0013	7	5	1	1	0	0	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	g0014	6	1	3	0	0	2	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	g0015	5	3	0	2	0	0	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	g0016	4	4	0	0	0	0	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	g0017	3	3	0	0	0	0	CAVIN4	chr9	100573079	100593389