JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CBLL1_chr7_107739142_107766667	0/0	g0094	1	0	0	1	0	0	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	g0095	1	0	0	1	0	0	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	g0096	1	1	0	0	0	0	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	g0097	1	0	0	1	0	0	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	g0098	1	0	0	1	0	0	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	g0099	1	0	0	1	0	0	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	g0100	1	0	0	1	0	0	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	g0101	1	0	0	0	0	1	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	g0102	1	0	0	1	0	0	CBLL1	chr7	107739142	107766667
CBLL2_chrX_22267913_22279461	1/1	g0000	346	79	62	164	13	26	CBLL2	chrX	22267913	22279461
CBLN1_chr16_49272917_49286838	0/1	g0001	153	23	37	77	5	10	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0002	78	7	14	45	0	12	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	1/0	g0003	19	6	4	2	4	2	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0004	16	0	0	16	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0005	11	1	2	7	0	1	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0006	10	4	0	0	0	6	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0007	9	5	0	2	2	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0008	7	7	0	0	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0009	7	2	0	2	0	3	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0010	6	1	3	0	2	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0011	6	0	4	0	0	2	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0012	5	5	0	0	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0013	4	4	0	0	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0014	3	0	1	2	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0015	3	3	0	0	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0016	3	0	0	0	3	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0017	3	0	0	3	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0018	3	3	0	0	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0019	3	3	0	0	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0020	3	0	2	0	0	1	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0021	2	0	0	0	0	2	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0022	2	0	0	2	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0023	2	2	0	0	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0024	2	0	0	0	0	2	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0025	1	0	0	1	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0026	1	0	0	1	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0027	1	0	1	0	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0028	1	1	0	0	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0029	1	0	0	1	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0030	1	1	0	0	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0031	1	0	0	1	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0032	1	0	0	1	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0033	1	0	0	1	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0034	1	0	0	1	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0035	1	0	0	0	0	1	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0036	1	0	0	1	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0037	1	1	0	0	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0038	1	0	1	0	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0039	1	0	0	0	1	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0040	1	0	0	0	1	0	CBLN1	chr16	49272917	49286838